Remove subfolder from all git history
# Remove DIRECTORY_NAME from all commits, then remove the refs to the old commits # (repeat these two commands for as many directories that you want to remove) git filter-branch --index-filter 'git rm -rf --cached --ignore-unmatch DIRECTORY_NAME/' --prune-empty --tag-name-filter cat -- --all git for-each-ref --format="%(refname)" refs/original/ | xargs -n 1 git update-ref -d # Ensure all old refs are fully removed rm -Rf .git/logs .git/refs/original # Perform a garbage collection to remove commits with no refs git gc --prune=all --aggressive